| SampleType | Prevalent | Basic | Comprehensive | Global | |
| Bacteria - Respiratory | |||||
|---|---|---|---|---|---|
|
Pasteurella pneumotropica Heyl / Rodentibacter heylii |
F, DOS, E |
• | • | • | • |
|
Pasteurella pneumotropica Jawetz / Rodentibacter pneumotropicus |
F, DOS, E | • | • | • | • |
|
Mycoplasma pulmonis |
F, DOS, E | • | • | • | |
|
Staphylococcus aureus |
F, DOS, E | • | • | ||
|
Streptococcus β-hemolytic (Group A, B, C, G) |
F, DOS, E | • | • | ||
|
Bordetella bronchiseptica |
F, DOS, E | • | |||
|
Bordetella hinzii / pseudohinzii |
F, DOS, E | • | |||
|
Corynebacterium kutscheri |
F, DOS, E | • | |||
| Streptobacillus moniliformis | F, DOS, E | • | |||
| Streptococcus pneumoniae | F, DOS, E | • | |||
|
Cilia-associated respiratory bacillus (CARB) / Filobacterium rodentium |
F, DOS, E | • | |||
| Bacteria - Enteric | |||||
|
Helicobacter spp. H.bilis, H.ganmani, H.hepaticus, H.mastomyrinus,H.rodentium, H.typhlonius |
F, E | • | • | • | • |
| Klebsiella oxytoca | F, E | • | • | • | |
| Klebsiella pneumoniae | F, E | • | • | • | |
| Salmonella spp. | F, E | • | • | • | |
| Citrobacter rodentium | F, E | • | • | ||
| Clostridium piliforme | F, E | • | • | ||
| Pseudomonas aeruginosa | F, E | • | • | ||
| Campylobacter spp. | F, E | • | |||
| Proteus mirabilis | F, E | • | |||
| Bacteria - Skin | |||||
| Corynebacterium bovis | FS, E | • | |||
| Staphylococcus xylosus | FS, E | • | |||
| Fungi | |||||
| Pneumocystis spp. | DOS, E | • | |||
| Viruses | |||||
| MHV | F, E | • | • | • | • |
| MVM | F, E | • | • | • | • |
| MPV (1-5) | F, E | • | • | • | • |
| MNV | F, E | • | • | • | • |
| TMEV | F, E | • | • | • | • |
| MRV/EDIM | F, E | • | • | • | • |
| MAV1, MAV2 | F, E | • | • | ||
| Mouse Kidney Parvovirus (MKPV) | F, E | • | |||
| REO 1, 2 and 3 | F, E | • | |||
| PVM | F, E | • | |||
| Sendai virus (SEND) | F, E | • | |||
| Ectromelia | F, E | • | |||
|
Hantaviruses (Hantaan & Seoul) |
F, E | • | |||
| Lymphocytic choriomeningitis virus (LCMV) | F, E | • | |||
| Parasites/Protozoa | |||||
|
Pinworms (Syphacia obvelata, Syphacia muris, Aspiculuris tetraptera) |
F, E | • | • | • | • |
|
Fur Mites (Myocoptes, Myobia and Radfordia spp.) |
FS, E | • | • | • | • |
| Spironucleus muris | F, E | • | • | • | • |
| Entamoeba muris | F, E | • | • | • | • |
| Tritrichomonas muris | F, E | • | • | ||
| Cryptosporidium spp. | F, E | • | |||
| Giardia spp. | F, E | • | |||
| Demodex | F, E | • | |||
| Ornithonyssus | FS, E, F | • | |||
| Sample Type |
Prevalent | Basic | Comprehensive | Global | |
|---|---|---|---|---|---|
| Bacteria - Respiratory | |||||
|
Pasteurella pneumotropica Heyl / Rodentibacter heylii |
F, DOS, E |
• | • | • | • |
|
Pasteurella pneumotropica Jawetz / Rodentibacter pneumotropicus |
F, DOS, E |
• | • | • | • |
|
Mycoplasma pulmonis |
F, DOS, E |
• | • | • | |
|
Streptococcus, β-hemolytic (Groups A, B, C, G) |
F, DOS, E |
• | • | ||
| Bordetella bronchiseptica |
F, DOS, E |
• | • | ||
| Corynebacterium kutscheri |
F, DOS, E |
• | |||
| Streptobacillus moniliformis |
F, DOS, E |
• | |||
| Streptococcus pneumoniae |
F, DOS, E |
• | |||
|
(CARB) / Filobacterium rodentium |
F, DOS, E |
• | |||
| Bacteria - Enteric | |||||
|
Helicobacter spp. H.bilis, H.ganmani, H.hepaticus, H.mastomyrinus,H.rodentium, H.typhlonius |
F, E |
• | • | • | • |
| Klebsiella oxytoca |
F, E |
• | • | • | |
| Klebsiella pneumoniae |
F, E |
• | • | • | |
| Salmonella spp. |
F, E |
• | • | • | |
| Clostridium piliforme |
F, E |
• | • | ||
| Pseudomonas aeruginosa |
F, E |
• | • | ||
| Campylobacter spp. |
F, E |
• | |||
| Proteus mirabilis |
F, E |
• | |||
| Bacteria - Skin | |||||
| Staphylococcus xylosus |
FS, F |
• | |||
| Fungi | |||||
| Pneumocystis spp. |
DOS, E |
• | |||
| Viruses | |||||
| RCV/SDAV |
F, E |
• | • | • | • |
| RPV |
F, E |
• | • | • | • |
| KRV |
F, E |
• | • | • | • |
| RMV |
F, E |
• | • | • | • |
| H-1 |
F, E |
• | • | • | • |
| RTV |
F, E |
• | • | • | • |
| BCV |
F, E |
• | • | ||
| MAV1, MAV2 |
F, E |
• | • | ||
| REO 1, 2 and 3 |
F, E |
• | |||
| PVM |
F, E |
• | |||
| Sendai virus (SEND) |
F, E |
• | |||
| Seoul virus |
F, E |
• | |||
| Parasites | |||||
|
Pinworms (Syphacia obvelata, Syphacia muris, Aspiculuris tetraptera) |
F, E |
• | • | • | • |
|
Fur Mites (Myocoptes, Myobia and Radfordia spp.) |
FS, E |
• | • | • | • |
| Spironucleus muris | F, E | • | • | • | • |
| Entamoeba muris | F, E | • | • | • | • |
| Tritrichomonas muris | F, E | • | • | ||
| Cryptosporidium spp. | F, E | • | |||
| Giardia spp. | F, E | • | |||
| Demodex | F, E | • | |||
| Ornithonyssus |
FS, F, E |
• | |||
Legend: F – Feces FS – Fur swab OS – Oral swab L – Lung E- Environmental
| Agent |
Preferred Specimen Type (italics = postmortem sample) |
Species |
|---|---|---|
| Viruses |
||
|
Boone cardiovirus (BCV) |
F, E |
Rat |
|
Ectromelia virus (mouse poxvirus) |
F, E, skin lesion |
Mouse |
|
Guinea pig adenovirus (GAV) |
F, E, OS, lung |
Guinea Pig |
|
Guinea pig cytomegalovirus (GPCMV) |
F, spleen, salivary gland |
Guinea Pig |
|
Hamster parvovirus (HaPV) |
F, MLN |
Hamster |
|
Hamster polyomavirus |
F, E, lesioned organs |
Hamster |
|
Hantaan virus |
F, E, kidney |
Mouse†, rat, guinea pig, hamster |
|
K virus (Mouse pneumotropic virus) |
F, E, MLN |
Mouse |
|
Kilham's rat virus (KRV) |
F, E, MLN, spleen |
Rat |
|
Lactate dehydrogenase-elevating virus (LDEV) |
serum, spleen |
Mouse |
|
Lymphocytic choriomeningitis virus (LCMV) |
F, E, kidney |
Mouse |
|
Minute virus of mice (MVM) |
F, E, MLN, spleen |
Mouse |
| Mouse adenovirus 1 (MAV1) | F, E, MLN | Mouse |
| Mouse adenovirus 2 (MAV2) | F, E, intestine | Mouse |
| Mouse cytomegalovirus 1 (mCMV1) | F, E, spleen, salivary gland | Mouse |
| Mouse cytomegalovirus 2 (mCMV2) | F, E, spleen, salivary gland | Mouse |
| Mouse hepatitis virus (MHV) | F, E, MLN | Mouse |
| Mouse Kidney Parvovirus (MKPV) | F, E, kidney | Mouse |
| Mouse parvovirus (MPV) | F, E, MLN, spleen | Mouse |
| Mouse rotavirus (EDIM) | F, E | Mouse |
| Mouse thymic virus (MTV) | F, E, OS, salivary gland | Mouse |
|
Murine astrovirus 1 (MuAstV1) |
F, E | Mouse |
| Murine norovirus (MNV) | F, E | Mouse |
| Murine polyomavirus | F, E, skin | Mouse |
| Pneumonia virus of mice (PVM) | F, E, OS, lung | Mouse |
| Rat coronavirus (RCV)/Sialodacryoadenitis virus (SDAV) | F, E, OS, Harderian gland | Rat |
| Rat cytomegalovirus1 (rCMV1) | F, E, OS, salivary gland | Rat |
| Rat cytomegalovirus2 (rCMV2) | F, E, OS, salivary gland | Rat |
| Rat minute virus (RMV) | F, E, MLN, spleen | Rat |
| Rat parvovirus (RPV) | F, E, MLN, spleen | Rat |
| Rat polyomavirus 2 (RPyV2) | F, E, OS | Rat |
| Rat rotavirus (IDIR) | F, E | Rat |
| Rat theilovirus (RTV) | F, E, intestine | Rat |
| Respiratory enteric orphan virus 1, 2 and 3 (REO1, 2 and 3) | F, E, intestine |
Mouse, rat, guinea pig, hamster |
| Sendai virus (SEND) | F, E, OS, lung |
Mouse, rat, guinea pig, hamster |
| Seoul virus | F, E, kidney |
Mouse†, Rat |
| Sin Nombre virus | F, E, kidney |
Mouse† |
| Theiler's murine encephalomyelitis virus (TMEV) | F, E |
Mouse |
| Toolan's H-1 virus (H-1) | F, E, MLN, spleen | Rat |
| Bacteria |
||
| Bordetella bronchiseptica | F, E, OS, trachea |
Mouse, guinea pig, rat, rabbit |
| Bordetella hinzii; Bordetella pseudohinzii | F, E, OS, trachea | Mouse |
|
Citrobacter rodentium |
F, E, colon | Mouse, rabbit |
|
Clostridium piliforme (Tyzzer’s disease) |
F, E |
Mouse, rat, rabbit |
|
Corynebacterium bovis |
F, E, fur swab |
Mouse, rat |
|
Corynebacterium spp. (HAC2) |
F, E, fur swab | Mouse |
|
Corynebacterium kutscheri |
F, E, OS |
Mouse, hamster, rat |
|
Cilia-associated respiratory bacillus (CARB) / Filobacterium rodentium |
F, E, OS, trachea |
Mouse, rat, rabbit |
| Helicobacter spp. | F, E |
Mouse, guinea pig, rabbit, rat |
| Helicobacter bilis | F, E |
Mouse, rabbit, rat |
| Helicobacter ganmani | F, E | Mouse, rabbit, rat |
| Helicobacter hepaticus | F, E | Mouse, rabbit, rat |
| Helicobacter mastomyrinus | F, E |
Mouse, rabbit, rat |
| Helicobacter rodentium | F, E |
Mouse, rabbit, rat |
| Helicobacter typhlonius | F, E | Mouse, rabbit, rat |
| Klebsiella oxytoca | F, E |
Mouse, rat |
| Klebsiella pneumoniae | F, E | Mouse, rat |
| Lawsonia intracellularis | F, E | Mouse, guinea pig, hamster, rat |
| Mycoplasma pulmonis | F, E, OS | Mouse, rat |
| Pasteurella multocida | F, E, OS | Rat |
| Proteus mirabilis | F, E | Mouse, guinea pig, hamster, rat |
| Pseudomonas aeruginosa | F, E | Mouse, rat |
|
Pasteurella pneumotropica Heyl / Rodentibacter heylii |
F, E, OS | Mouse, rat |
|
Pasteurella pneumotropica Jawetz /Rodentibacter pneumotropicus |
F, E, OS | Mouse, rat |
| Salmonella spp. | F, E | Mouse, guinea pig, hamster, rabbit, rat |
| Segmented filamentous bacterium | F, E | Mouse |
| Staphylococcus aureus | F, E, OS, FS/SS | Mouse, rat |
| Staphylococcus xylosus | F, E, OS, FS/SS | Mouse, rat |
| Streptobacillus moniliformis | F, E, OS | Mouse, rat |
| Streptococcus, β-hemolytic | F, E, OS | Mouse, rat |
| Streptococcus pyogenes (Group A) | F, E, OS | Mouse, rat |
| Streptococcus agalactiae (Group B) | F, E, OS | Mouse, rat |
| Streptococcus equi subsp. zooepidemicus (Group C) | F, E, OS | Mouse, rat |
| Streptococcus canis (Group G) | F, E, OS | Mouse, rat |
| Streptococcus pneumoniae | F, E, OS | Mouse, rat |
| Treponema paraluis-cuniculi | Genital swab | Rabbit |
| Fungi |
||
| Encephalitozoon cuniculi | F, kidney |
Mouse, guinea pig,hamster, rabbit, rat |
| Pneumocystis spp. | F, E, OS, lung |
Mouse, rat |
| Endoparasites |
||
| Aspiculuris tetraptera | F, E |
Mouse, rat |
| Chilomastix spp. | F, E |
Mouse, rat |
| Cryptosporidium spp. | F, E |
Mouse, rat |
| Eimeria spp. | F, E |
Rabbit |
| Entamoeba muris | F, E |
Mouse, rat |
| Giardia muris | F, E |
Mouse, rat |
| Hymenolepis diminuta | F, E |
Mouse, rat |
| Rodentolepis nana | F, E |
Mouse, rat |
| Spironucleus muris | F, E |
Mouse, rat |
| Syphacia muris | F, E |
Mouse, rat |
| Syphacia obvelata | F, E |
Mouse, rat |
| Tritrichomonas muris | F, E |
Mouse, rat |
| Ectoparasites | ||
| Demodex musculi | FS, E, F |
Mouse |
| Myocoptes musculinus | FS, E, F |
Mouse |
| Ornithonyssus spp. | FS, E, F |
Mouse, rat |
| Radfordia affinis/Radfordia ensiphera/Myobia musculi | FS, E, F |
Mouse, rat |
Legend: F – Feces E- Environmental sample FS – Fur swab MLN - Mesenteric lymph node OS – Oral swab SS - skin swab WF - whole fish
| Zebrafish | Amphibians | |
|---|---|---|
| Batrachochytrium dendrobatidis | SS, E, skin | |
| Batrachochytrium salamadrivorans | SS, E, skin | |
| Cryptosporidium spp. | F, stomach | |
| Edwardsiella ictaluri | WF, E | |
| Flavobacterium columnare | WF | SS, E, skin |
| Ichthyophthirius multifiliis | WF | |
| ISKNV (Infectious Spleen and Kidney Necrosis Virus) | WF, E | |
| Mycobacterium abscessus | WF, E | |
| Mycobacterium chelonae | WF, E | pooled viscera, E |
| Mycobacterium fortuitum | WF, E | |
| Mycobacterium gordonae | WF, E | pooled viscera, E |
| Mycobacterium haemophilum | WF, E | |
| Mycobacterium marinum | WF, E | pooled viscera, E |
| Mycobacterium peregrinum | WF, E | |
| Mycobacterium saopaulense | WF, E | |
| Myxidium streisingeri | WF, E | |
| Piscinoodinium pillulare | WF | SS, skin |
| Pleistophora hyphessobryconis | WF | |
| Pseudocapillaria tomentosa | WF, E | |
| Pseudocapillaroides xenopi | SS, E, skin | |
| Pseudoloma neurophilia | WF | |
| Pseudomonas aeruginosa | F, SS, E | |
| Ranavirus spp. | F, cloacal swab, tissue | |
| Salmonella spp. | F | |
| Zebrafish picornavirus NEW! | WF |
Legend: F – Feces E- Environmental sample FS – Fur swab MLN - Mesenteric lymph node OS – Oral swab SS - skin swab WF - whole fish
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